PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G078100.1
Common NameB456_012G078100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 164aa    MW: 18738.1 Da    PI: 6.5264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G078100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-134490354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        ++h+++E+rRRdriN  ++ Lrel+P +      K++Ka+ L+ Ave +k+L
  Gorai.012G078100.1 44 TSHSQAEKRRRDRINAQLSALRELIPMS-----HKMDKAALLKSAVEQVKDL 90
                        68*************************8.....6*************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7674190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-144297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-114493No hitNo description
PfamPF000104.8E-114490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-154493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-114796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MENYYQSSSW TDFSDKVSND SSFIVPWTIP VEEIAEDTAT TVYTSHSQAE KRRRDRINAQ  60
LSALRELIPM SHKMDKAALL KSAVEQVKDL KRKAAEISKA FNIPTEMDEV DWDRPQDINP  120
NGSRQGNDSK DKIFIRASVC WDDRPEVFTE LIKILKGLKA KHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164451e-110JX616445.1 Gossypium hirsutum clone NBRI_GE61128 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007008919.13e-63Basic helix-loop-helix DNA-binding superfamily protein, putative
TrEMBLA0A0D2V2Z11e-119A0A0D2V2Z1_G
STRINGGLYMA18G02940.18e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-30bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]